PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10022375m
Common NameCICLE_v10022375mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 195aa    MW: 22356.9 Da    PI: 5.9902
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10022375mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000212648123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C  C++ F++   L  H++ H
  Ciclev10022375m 26 YECVFCKRGFTTAQALGGHMNIH 48
                     99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.6E-41852IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.24E-62452No hitNo description
PROSITE profilePS5015710.992653IPR007087Zinc finger, C2H2
PROSITE patternPS0002802848IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MESNPNEDYS KSSSEEETDT GTGRSYECVF CKRGFTTAQA LGGHMNIHRK DRAKNRPPSS  60
SSISDKLVDE NNNNYYSSFR SFAPVQSYPT SHHQYYAMSD SEVHVNYQTF FPSPSTWDDH  120
QRSVHTNNNN HSNYDSYGQN YHQHLNMIGD EIWRGNRSLR VGPSHLHADH DKEKREGVSE  180
EDELDLELRL GHDP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015386253.11e-145PREDICTED: probable transcriptional regulator RABBIT EARS
RefseqXP_006443883.11e-145hypothetical protein CICLE_v10022375mg
TrEMBLV4TA071e-145V4TA07_9R
STRINGPOPTR_0002s04250.11e-57(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15373717
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.12e-13C2H2 family protein